{ "_id": "6ad4818a104c877e3b414674", "Package": "SIRthresholded", "Type": "Package", "Title": "Sliced Inverse Regression with Thresholding", "Version": "1.0.2", "Authors@R": "c(person(\"Clement\", \"Weinreich\", role = c(\"aut\", \"cre\"),\nemail = \"clement@weinreich.fr\"),\nperson(\"Jerome\", \"Saracco\", role = c(\"aut\")),\nperson(\"Hadrien\", \"Lorenzo\", role = c(\"aut\")))", "Author": "Clement Weinreich [aut, cre], Jerome Saracco [aut], Hadrien\nLorenzo [aut]", "Maintainer": "Clement Weinreich ", "License": "GPL (>=2.0)", "Description": "Implements a thresholded version of the Sliced Inverse\nRegression method, which allows to do variable selection.", "Encoding": "UTF-8", "RoxygenNote": "7.2.0", "VignetteBuilder": "knitr", "URL": "https://clement-w.github.io/SIRthresholded/", "Repository": "https://clement-w.r-universe.dev", "Date/Publication": "2024-09-23 11:57:44 UTC", "RemoteUrl": "https://github.com/clement-w/sirthresholded", "RemoteRef": "HEAD", "RemoteSha": "c88b0017789612bbdd632ffeeba217d993d9006e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-18 08:15:42 UTC", "User": "root" }, "_user": "clement-w", "_type": "src", "_file": "SIRthresholded_1.0.2.tar.gz", "_fileid": "https://r2.ropensci.org/24d3f88c8dccea84036c6a842361722f8cdc42ed8e2f5c367aa7ba75963ea93e", "_filesize": 1852662, "_sha256": "24d3f88c8dccea84036c6a842361722f8cdc42ed8e2f5c367aa7ba75963ea93e", "_expires": "2027-01-26T08:21:28.000Z", "_created": "2026-10-18T08:15:42.000Z", "_published": "2026-10-18T08:21:30.067Z", "_buildurl": "https://github.com/r-universe/clement-w/actions/runs/39110591540", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 117626274822, "time": 97, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12130261810" }, { "job": 117626274812, "time": 135, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12130043545" }, { "job": 117626274840, "time": 194, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12130132275" }, { "job": 117626274807, "time": 179, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12130751239" }, { "job": 117625757409, "time": 159, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12130615673" }, { "job": 117626274824, "time": 80, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12130352615" }, { "job": 117626274827, "time": 66, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12130486924" }, { "job": 117626274910, "time": 64, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12130402425" }, { "job": 117626274913, "time": 70, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12130790572" } ], "_upstream": "https://github.com/clement-w/sirthresholded", "_commit": { "id": "c88b0017789612bbdd632ffeeba217d993d9006e", "author": "Clément Weinreich ", "committer": "GitHub ", "message": "fix README.md", "time": 1727092664 }, "_maintainer": { "name": "Clement Weinreich", "email": "clement@weinreich.fr", "login": "clement-w", "description": "PhD student in Machine Learning for Genomics at Institut Pasteur, CNRS", "uuid": 55914021 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "strucchange", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "mvtnorm", "role": "Suggests" } ], "_owner": "clement-w", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "dimensionality-reduction", "inverse-regression", "statistical-learning", "variable-selection" ], "_stars": 3, "_contributors": [ { "user": "clement-w", "count": 105, "uuid": 55914021 }, { "user": "hlorenzo", "count": 1, "uuid": 9289148 } ], "_userbio": { "uuid": 55914021, "type": "user", "name": "Clément Weinreich", "followers": 19, "description": "PhD student in Machine Learning for Genomics at Institut Pasteur, CNRS" }, "_downloads": { "count": 222, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SIRthresholded" }, "_devurl": "https://github.com/clement-w/sirthresholded", "_pkgdown": "https://clement-w.github.io/SIRthresholded/", "_searchresults": 5, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/SIRthresholded.html" ], "_homeurl": "https://github.com/clement-w/sirthresholded", "_realowner": "clement-w", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2022-08-17" }, { "version": "1.0.2", "date": "2023-06-09" } ], "_exports": [ "SIR", "SIR_bootstrap", "SIR_threshold", "SIR_threshold_bootstrap", "SIR_threshold_opt" ], "_help": [ { "page": "plot.SIR", "title": "Graphical output of SIR", "topics": [ "plot.SIR" ] }, { "page": "plot.SIR_bootstrap", "title": "Graphical output of SIR_bootstrap", "topics": [ "plot.SIR_bootstrap" ] }, { "page": "plot.SIR_threshold", "title": "Graphical output of SIR_threshold", "topics": [ "plot.SIR_threshold" ] }, { "page": "plot.SIR_threshold_bootstrap", "title": "Graphical output of SIR_threshold_bootstrap", "topics": [ "plot.SIR_threshold_bootstrap" ] }, { "page": "plot.SIR_threshold_opt", "title": "Graphical output of SIR_threshold_opt", "topics": [ "plot.SIR_threshold_opt" ] }, { "page": "SIR", "title": "Classic SIR", "topics": [ "SIR" ] }, { "page": "SIR_bootstrap", "title": "Bootstrap SIR", "topics": [ "SIR_bootstrap" ] }, { "page": "SIR_threshold", "title": "SIR threshold", "topics": [ "SIR_threshold" ] }, { "page": "SIR_threshold_bootstrap", "title": "SIR optimally thresholded on bootstraped replications", "topics": [ "SIR_threshold_bootstrap" ] }, { "page": "SIR_threshold_opt", "title": "SIR optimally thresholded", "topics": [ "SIR_threshold_opt" ] } ], "_readme": "https://github.com/clement-w/sirthresholded/raw/HEAD/README.md", "_rundeps": [ "lattice", "sandwich", "strucchange", "zoo" ], "_vignettes": [ { "source": "SIRthresholded.Rmd", "filename": "SIRthresholded.html", "title": "How to use the SIRthresholded package", "author": "Clément Weinreich", "engine": "knitr::rmarkdown", "headings": [ "How SIR and SIR thresholded works", "The semi-parametric model", "The SIR method", "Variable selection by soft or hard thresholding", "Overview of the package", "SIR function", "SIR_bootstrap function", "SIR_threshold function", "SIR_threshold_opt function", "SIR_threshold_bootstrap function", "Example with simulated data", "Generate the data", "Create a SIR model", "Use optimally thresholded SIR", "Estimate a new SIR model on the relevant variables", "SIR thresholded with a given $\\lambda$ parameter", "Test the robustness of the model with bootstrapping", "Example with Wine dataset", "The data", "A first SIR model", "Perform Bootstrap", "Thresholding with a custom $\\lambda$", "Estimate a SIR model on the relevant variables", "Additional study", "Concluding remarks", "References" ], "created": "2022-07-05 12:25:11", "modified": "2023-06-09 06:47:19", "commits": 37 } ], "_score": 4.176091259055681, "_indexed": true, "_nocasepkg": "sirthresholded", "_universes": [ "clement-w" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.2", "date": "2026-10-18T08:17:21.000Z", "distro": "resolute", "commit": "c88b0017789612bbdd632ffeeba217d993d9006e", "fileid": "https://r2.ropensci.org/d2dfbbfc775e423511acd18633299620b6e6f4f8b4e80d5fa53d6a3734f0ec37", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clement-w/actions/runs/39110591540" }, { "r": "4.6.1", "os": "linux", "version": "1.0.2", "date": "2026-10-18T08:18:00.000Z", "distro": "resolute", "commit": "c88b0017789612bbdd632ffeeba217d993d9006e", "fileid": "https://r2.ropensci.org/a9edbb56c098998f0395015fc9a79dd390a5f7ac6283dd1bb2b862dbb8598e32", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clement-w/actions/runs/39110591540" }, { "r": "4.5.3", "os": "mac", "version": "1.0.2", "date": "2026-10-18T08:20:17.000Z", "commit": "c88b0017789612bbdd632ffeeba217d993d9006e", "fileid": "https://r2.ropensci.org/a3f05547fa38df7834f3f6e81b673ea825b96e28ebadfca9dd5f36acd1f72fe6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clement-w/actions/runs/39110591540" }, { "r": "4.6.1", "os": "mac", "version": "1.0.2", "date": "2026-10-18T08:19:58.000Z", "commit": "c88b0017789612bbdd632ffeeba217d993d9006e", "fileid": "https://r2.ropensci.org/a8678ba12100b7ab1978d9ac6df38e07d351f199c56caacacc88b7cb6c54b4b8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clement-w/actions/runs/39110591540" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.2", "date": "2026-10-18T08:17:16.000Z", "commit": "c88b0017789612bbdd632ffeeba217d993d9006e", "fileid": "https://r2.ropensci.org/6a353ee8793c081a5d0ee3d3131312c36d6f613eb8e5419f8d1f6338743fa1a1", "status": "success", "buildurl": "https://github.com/r-universe/clement-w/actions/runs/39110591540" }, { "r": "4.7.0", "os": "win", "version": "1.0.2", "date": "2026-10-18T08:16:45.000Z", "commit": "c88b0017789612bbdd632ffeeba217d993d9006e", "fileid": "https://r2.ropensci.org/d9cb47de8c4eed577a256edd6603d011c720174916c994a8cdd02031a40a458b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clement-w/actions/runs/39110591540" }, { "r": "4.5.3", "os": "win", "version": "1.0.2", "date": "2026-10-18T08:16:44.000Z", "commit": "c88b0017789612bbdd632ffeeba217d993d9006e", "fileid": "https://r2.ropensci.org/2fb4967d39e9fa95be13ea59d7f3d6d4a29de6121a73ce0a7feb56fe0ffffd94", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clement-w/actions/runs/39110591540" }, { "r": "4.6.1", "os": "win", "version": "1.0.2", "date": "2026-10-18T08:16:50.000Z", "commit": "c88b0017789612bbdd632ffeeba217d993d9006e", "fileid": "https://r2.ropensci.org/2751a1019c4746b6728dd82332ecd81a13f22ac4f60eb12e6720b4679c39a376", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clement-w/actions/runs/39110591540" } ] }