{
  "_id": "6a0f77d7acfb0bcc41c6221a",
  "Package": "SIRthresholded",
  "Type": "Package",
  "Title": "Sliced Inverse Regression with Thresholding",
  "Version": "1.0.2",
  "Authors@R": "c(person(\"Clement\", \"Weinreich\", role = c(\"aut\", \"cre\"),\nemail = \"clement@weinreich.fr\"),\nperson(\"Jerome\", \"Saracco\", role = c(\"aut\")),\nperson(\"Hadrien\", \"Lorenzo\", role = c(\"aut\")))",
  "Author": "Clement Weinreich [aut, cre], Jerome Saracco [aut], Hadrien\nLorenzo [aut]",
  "Maintainer": "Clement Weinreich <clement@weinreich.fr>",
  "License": "GPL (>=2.0)",
  "Description": "Implements a thresholded version of the Sliced Inverse\nRegression method, which allows to do variable selection.",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.0",
  "VignetteBuilder": "knitr",
  "URL": "https://clement-w.github.io/SIRthresholded/",
  "Repository": "https://clement-w.r-universe.dev",
  "Date/Publication": "2024-09-23 11:57:44 UTC",
  "RemoteUrl": "https://github.com/clement-w/sirthresholded",
  "RemoteRef": "HEAD",
  "RemoteSha": "c88b0017789612bbdd632ffeeba217d993d9006e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-21 06:05:32 UTC",
    "User": "root"
  },
  "MD5sum": "78d6c2115824a655b0ace882802068db",
  "_user": "clement-w",
  "_type": "src",
  "_file": "SIRthresholded_1.0.2.tar.gz",
  "_fileid": "9bf1fd724d0cf44747555bebf88b45dda73767329bf9c3027bb59e427f44e8c6",
  "_filesize": 1855124,
  "_sha256": "9bf1fd724d0cf44747555bebf88b45dda73767329bf9c3027bb59e427f44e8c6",
  "_created": "2026-05-21T06:05:32.000Z",
  "_published": "2026-05-21T21:23:35.938Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77271538531,
      "time": 96,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7128422573"
    },
    {
      "job": 77271538608,
      "time": 109,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7128425456"
    },
    {
      "job": 77271538485,
      "time": 167,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7128431384"
    },
    {
      "job": 77271538566,
      "time": 145,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7128427314"
    },
    {
      "job": 77271537867,
      "time": 180,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7128400964"
    },
    {
      "job": 77271537653,
      "time": 96,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7147529959"
    },
    {
      "job": 77271538379,
      "time": 73,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7128417435"
    },
    {
      "job": 77271538482,
      "time": 68,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7128416533"
    },
    {
      "job": 77271538570,
      "time": 69,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7128416655"
    }
  ],
  "_buildurl": "https://github.com/r-universe/clement-w/actions/runs/26208511239",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/clement-w/sirthresholded",
  "_commit": {
    "id": "c88b0017789612bbdd632ffeeba217d993d9006e",
    "author": "Clément Weinreich <clement@weinreich.fr>",
    "committer": "GitHub <noreply@github.com>",
    "message": "fix README.md",
    "time": 1727092664
  },
  "_maintainer": {
    "name": "Clement Weinreich",
    "email": "clement@weinreich.fr",
    "login": "clement-w",
    "description": "PhD student in Machine Learning for Genomics at Institut Pasteur, CNRS",
    "uuid": 55914021
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "strucchange",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "mvtnorm",
      "role": "Suggests"
    }
  ],
  "_owner": "clement-w",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "dimensionality-reduction",
    "inverse-regression",
    "statistical-learning",
    "variable-selection"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "clement-w",
      "count": 105,
      "uuid": 55914021
    },
    {
      "user": "hlorenzo",
      "count": 1,
      "uuid": 9289148
    }
  ],
  "_userbio": {
    "uuid": 55914021,
    "type": "user",
    "name": "Clément Weinreich",
    "description": "PhD student in Machine Learning for Genomics at Institut Pasteur, CNRS"
  },
  "_downloads": {
    "count": 161,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SIRthresholded"
  },
  "_devurl": "https://github.com/clement-w/sirthresholded",
  "_pkgdown": "https://clement-w.github.io/SIRthresholded/",
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SIRthresholded.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/clement-w/sirthresholded",
  "_realowner": "clement-w",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2022-08-17"
    },
    {
      "version": "1.0.2",
      "date": "2023-06-09"
    }
  ],
  "_exports": [
    "SIR",
    "SIR_bootstrap",
    "SIR_threshold",
    "SIR_threshold_bootstrap",
    "SIR_threshold_opt"
  ],
  "_help": [
    {
      "page": "plot.SIR",
      "title": "Graphical output of SIR",
      "topics": [
        "plot.SIR"
      ]
    },
    {
      "page": "plot.SIR_bootstrap",
      "title": "Graphical output of SIR_bootstrap",
      "topics": [
        "plot.SIR_bootstrap"
      ]
    },
    {
      "page": "plot.SIR_threshold",
      "title": "Graphical output of SIR_threshold",
      "topics": [
        "plot.SIR_threshold"
      ]
    },
    {
      "page": "plot.SIR_threshold_bootstrap",
      "title": "Graphical output of SIR_threshold_bootstrap",
      "topics": [
        "plot.SIR_threshold_bootstrap"
      ]
    },
    {
      "page": "plot.SIR_threshold_opt",
      "title": "Graphical output of SIR_threshold_opt",
      "topics": [
        "plot.SIR_threshold_opt"
      ]
    },
    {
      "page": "SIR",
      "title": "Classic SIR",
      "topics": [
        "SIR"
      ]
    },
    {
      "page": "SIR_bootstrap",
      "title": "Bootstrap SIR",
      "topics": [
        "SIR_bootstrap"
      ]
    },
    {
      "page": "SIR_threshold",
      "title": "SIR threshold",
      "topics": [
        "SIR_threshold"
      ]
    },
    {
      "page": "SIR_threshold_bootstrap",
      "title": "SIR optimally thresholded on bootstraped replications",
      "topics": [
        "SIR_threshold_bootstrap"
      ]
    },
    {
      "page": "SIR_threshold_opt",
      "title": "SIR optimally thresholded",
      "topics": [
        "SIR_threshold_opt"
      ]
    }
  ],
  "_readme": "https://github.com/clement-w/sirthresholded/raw/HEAD/README.md",
  "_rundeps": [
    "lattice",
    "sandwich",
    "strucchange",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "SIRthresholded.Rmd",
      "filename": "SIRthresholded.html",
      "title": "How to use the SIRthresholded package",
      "author": "Clément Weinreich",
      "engine": "knitr::rmarkdown",
      "headings": [
        "How SIR and SIR thresholded works",
        "The semi-parametric model",
        "The SIR method",
        "Variable selection by soft or hard thresholding",
        "Overview of the package",
        "SIR function",
        "SIR_bootstrap function",
        "SIR_threshold function",
        "SIR_threshold_opt function",
        "SIR_threshold_bootstrap function",
        "Example with simulated data",
        "Generate the data",
        "Create a SIR model",
        "Use optimally thresholded SIR",
        "Estimate a new SIR model on the relevant variables",
        "SIR thresholded with a given $\\lambda$ parameter",
        "Test the robustness of the model with bootstrapping",
        "Example with Wine dataset",
        "The data",
        "A first SIR model",
        "Perform Bootstrap",
        "Thresholding with a custom $\\lambda$",
        "Estimate a SIR model on the relevant variables",
        "Additional study",
        "Concluding remarks",
        "References"
      ],
      "created": "2022-07-05 12:25:11",
      "modified": "2023-06-09 06:47:19",
      "commits": 37
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "sirthresholded",
  "_universes": [
    "clement-w"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-05-21T06:07:11.000Z",
      "distro": "noble",
      "commit": "c88b0017789612bbdd632ffeeba217d993d9006e",
      "fileid": "fcf84069d81abc7ae6e7e5b6790b7259c4818d1a2b91b3b4e18a93bb5bb626cd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/clement-w/actions/runs/26208511239"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-05-21T06:07:24.000Z",
      "distro": "noble",
      "commit": "c88b0017789612bbdd632ffeeba217d993d9006e",
      "fileid": "3b35e5f13e6c010ee0a624ee8e41cf6b7bc8839d4811485a17db055061603414",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/clement-w/actions/runs/26208511239"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-05-21T06:07:50.000Z",
      "commit": "c88b0017789612bbdd632ffeeba217d993d9006e",
      "fileid": "776ed1d9462b2929d3fae4710de96d0fb36bd0ca5664ef784cc6001b2bb9582e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/clement-w/actions/runs/26208511239"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-05-21T06:07:35.000Z",
      "commit": "c88b0017789612bbdd632ffeeba217d993d9006e",
      "fileid": "8c7a9a1fc2faa1718683d92b93e947e269d50faa190a05db29a9bcd2da890040",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/clement-w/actions/runs/26208511239"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-05-21T21:23:16.000Z",
      "commit": "c88b0017789612bbdd632ffeeba217d993d9006e",
      "fileid": "cb908cb53bba80d94925338248ca0b0c5fa28307846a28ec38543bf4732236cd",
      "status": "success",
      "buildurl": "https://github.com/r-universe/clement-w/actions/runs/26208511239"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-05-21T06:06:43.000Z",
      "commit": "c88b0017789612bbdd632ffeeba217d993d9006e",
      "fileid": "5815e3c8631226ab74207389fe0df5522c37929f0f92e99fd463ba2a7ccb208d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/clement-w/actions/runs/26208511239"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-05-21T06:06:40.000Z",
      "commit": "c88b0017789612bbdd632ffeeba217d993d9006e",
      "fileid": "767f85470522585ca6d640c786a553ba2e93c8a006e8b38a0efb59752e2862a2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/clement-w/actions/runs/26208511239"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-05-21T06:06:39.000Z",
      "commit": "c88b0017789612bbdd632ffeeba217d993d9006e",
      "fileid": "7d68c6695f227021040fa56a2cf85a80635df2f2203c643e6e622ad119444391",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/clement-w/actions/runs/26208511239"
    }
  ]
}